rs253363392 SNP Detail

Summary

• ID
  rs253363392
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCCAA CTTAGGGGCA
  TGCTCTGCAT TTAAAAAAAA TATACTCACT TTTGCTTTCC CTACTGTGGT GAGGGTAAAA
  TATGATTCGG AAATTAAAGA GCCTCATGTT TATTACGTGT GCAGACCACT CCTTTTGCTC
  AGCTGAACAG GAGGTATTTT GCCTCTCCCT TCGCTTCTTT CCCCAGCCCC TGCTTTCTTA
  M
  AAGAGGTACA AAGGGACAAT TAGCAAGTAT GAGGTGGTGT ATATAGACTG TATGCTTATA
  CGACACATTT CATAGCCTCT GTATCACTAC ACTTGCAAAA CTACCCACAG GATGTTTTGG
  GCCTGCATTT TTAAGTGGCT TACCTGAGAC CCTTTGCCTC ATACCTATGA AGAAGGGTAA
  CACCCTATGT ATTTAATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255944	CHEV_4_109961192	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253363392					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145784 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1709 bp distal
Rr597419	regulatory region 597419	1208 bp distal
Rr597420	regulatory region 597420	570 bp distal
Rr597421	regulatory region 597421	1675 bp proximal
Tssr42787	transcription start site region 42787	1970 bp upstream
Tssr42788	transcription start site region 42788	1946 bp upstream
Tssr42789	transcription start site region 42789	1701 bp upstream
Tssr42790	transcription start site region 42790	1053 bp upstream