rs253359049 SNP Detail

Summary

• ID
  rs253359049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTAGTA AAGCTAGAAT
  CCAGGCTAGC TTTAAGTAGA TTTCCAAGAT AATCAATGTC AGCTGCCATT TGGTAGGTCT
  CTCCATGTGC TGTTGGCACA GTGACAGATG GTTGATATCA AGTCAGATCA CACAGAAAAC
  CTCTTTGAGC ATTTAAGAAG ATTCTTTTCA GGAGAGAAAA CAGACTTCTA GGTGCTTAAG
  R
  GTTTTGTTTC AGGTCACATA CTACACAGCA CGCTGCCCAT CTCCAAAGAG GGTTTGCCAG
  CGTGTATTGA TTGGCTCACC TGGGCCAATG ACCTTGACCT AACTGTTGGG CCACTAGAAT
  CTACTTTTTA TTGTCTCTAG GTTAGCAGCA GCAAGGAACA ATACACAGAT AAATAGCCTG
  GGATGTCATA GGAAAGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361714308	MGP_WTSI_4_62164732	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253359049					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714308	MGP_WTSI_4_62164732	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	1188 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	1498 bp upstream
Rr593325	regulatory region 593325	1433 bp distal
Rr593326	regulatory region 593326	932 bp distal
Rr593327	regulatory region 593327	1762 bp proximal
Tssr42008	transcription start site region 42008	1516 bp upstream
Tssr42009	transcription start site region 42009	1472 bp upstream
Tssr42010	transcription start site region 42010	1438 bp upstream