rs253335763 SNP Detail

Summary

• ID
  rs253335763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69759734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTATGT GATGGCTCAC
  AACTGTCTGT AACAATAGTT CTTGGGAATC CAATATTCTC TTGTGGCTAC GACAGGCACA
  TACAAATGTG CAGACAAACG CTCTCACACA TAAAATAATT TTTAAAAGTT CCCAATATTT
  TTCTGGGAGT GGTGGTGTAT ACCTCTAGGC AGTTGGTGGA GGGGGAGGGA AGGGGGAGGG
  R
  GGAAGGGAAG GAGATGAAGG AGGTGGAGGG GGAGGCGGAG GGGGAGGGGG AGGAGGTGGA
  AGAGGTGGCT ACAGTGAGTT TGTGAGTTTG AGGTGAGCTG TAGTACACAA GGCCTTTAAC
  ACACACACAC ACACACACAC ACACACACAC ACACACCTTA TACATATATC TATATATACA
  CACATATACA TATATATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354381298	MGP_WTSI_2_69767447	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253335763					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354381298	MGP_WTSI_2_69767447	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69759734 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558496	regulatory region 558496			537 bp proximal
Tssr18186	transcription start site region 18186			1138 bp upstream
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant