rs253329058 SNP Detail

Summary

• ID
  rs253329058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100761677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTAAAGG ATATTTAGTT TTCCTTATAA
  TTGTAAATTT AGCTTACATT TCCTGCAATG TTTCTTTTCT CTTAGAGGGA GAACTTCAGT
  TTGTGCCTCA TTTCTGGAAG AAAGTGTTCA AGAAGACTCA GTTTTAACAA GTAATCACCC
  R
  CCACTATTAC TGGCTCCATT CTTGATCAGA GCCAACTGGG TTTCTCTTAT TCCAATGTTC
  CAGAACATTT TGTTATGATT CATAGCATCG GCAAGATTTC ACTTCACAGT CTTAAAAACT
  ACCGTGTTCC TTTATAGAGA AAGACGAGTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320849819	CHEV_3_100658284	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253329058					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100761677 () rs orientation: forward

Symbol	Name	Function Class
Rr581917	regulatory region 581917	1998 bp proximal
Vtcn1	V-set domain containing T cell activation inhibitor 1	Intron