rs253321767 SNP Detail

Summary

• ID
  rs253321767
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19365563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCGTTAA AGGGGAACCC
  GCCGCCCAGG CGCTCCGCGG CGCGAGAGCT GGCCCGGGCC GCGAGCACGG GCGCGGAGCG
  TAGAGCAGTT CGGCCGCCGG AGCCCTGCCC CCTCCCCTCC CCCGAGCCTC ACTCCGCTCC
  GCCGCCGGCG CGAGCCCGGC GTAATTCACA CTTTGCAGCA GCGGACCCTG CGCCAACCAC
  S
  GCCGCCGCCA CCGTGACGTC ACGACGCCGC GCCGCATGCC CCGCGCCCCG CGCCGCCGCC
  GCGCCCAGGA GCCCGCCGGC TGTCCGGACA GGGCTGCTCG CGTCCGCTGC GCTAGGCGCC
  GCGCCGCGCC GCGCCGCGCC CCGCGCCCCC CCGGCCCCTC CCGCCTCCCC GCAGCTCCCT
  CCCCGCAACC CGCGGCGCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357153128	MGP_WTSI_3_19211399	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253321767					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357153128	MGP_WTSI_3_19211399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19365563 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	Coding-Synonymous
Cpgi13002	CpG island 13002	within coordinates
Gm66414	predicted gene, 66414	238 bp upstream
Pde7a	phosphodiesterase 7A	77 bp upstream
Rr573969	regulatory region 573969	88 bp distal
Rr573970	regulatory region 573970	within coordinates
Rr573971	regulatory region 573971	249 bp proximal
Tssr28510	transcription start site region 28510	694 bp downstream
Tssr28511	transcription start site region 28511	540 bp downstream
Tssr28512	transcription start site region 28512	41 bp upstream
Tssr28513	transcription start site region 28513	82 bp upstream
Tssr32696	transcription start site region 32696	136 bp upstream
Tssr32697	transcription start site region 32697	85 bp upstream
Tssr32698	transcription start site region 32698	55 bp upstream
Tssr32699	transcription start site region 32699	21 bp upstream
Tssr32700	transcription start site region 32700	within coordinates
Tssr32701	transcription start site region 32701	793 bp downstream