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rs253321767 SNP Detail
Summary
  • ID
    rs253321767
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:19365563 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCGGCGTTAA AGGGGAACCC
    GCCGCCCAGG CGCTCCGCGG CGCGAGAGCT GGCCCGGGCC GCGAGCACGG GCGCGGAGCG
    TAGAGCAGTT CGGCCGCCGG AGCCCTGCCC CCTCCCCTCC CCCGAGCCTC ACTCCGCTCC
    GCCGCCGGCG CGAGCCCGGC GTAATTCACA CTTTGCAGCA GCGGACCCTG CGCCAACCAC
    S
    GCCGCCGCCA CCGTGACGTC ACGACGCCGC GCCGCATGCC CCGCGCCCCG CGCCGCCGCC
    GCGCCCAGGA GCCCGCCGGC TGTCCGGACA GGGCTGCTCG CGTCCGCTGC GCTAGGCGCC
    GCGCCGCGCC GCGCCGCGCC CCGCGCCCCC CCGGCCCCTC CCGCCTCCCC GCAGCTCCCT
    CCCCGCAACC CGCGGCGCGT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357153128 MGP_WTSI_3_19211399 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G C G G C G G G C G G G G G G G G G C G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253321767 SNP G G G G G G G G G G G G G C G G C G G G C G G G G G G G G G C G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357153128 MGP_WTSI_3_19211399 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:19365563 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
3110037C07Rik RIKEN cDNA 3110037C07 gene Coding-Synonymous
Cpgi13002 CpG island 13002 within coordinates
Gm66414 predicted gene, 66414 238 bp upstream
Pde7a phosphodiesterase 7A 77 bp upstream
Rr573969 regulatory region 573969 88 bp distal
Rr573970 regulatory region 573970 within coordinates
Rr573971 regulatory region 573971 249 bp proximal
Tssr28510 transcription start site region 28510 694 bp downstream
Tssr28511 transcription start site region 28511 540 bp downstream
Tssr28512 transcription start site region 28512 41 bp upstream
Tssr28513 transcription start site region 28513 82 bp upstream
Tssr32696 transcription start site region 32696 136 bp upstream
Tssr32697 transcription start site region 32697 85 bp upstream
Tssr32698 transcription start site region 32698 55 bp upstream
Tssr32699 transcription start site region 32699 21 bp upstream
Tssr32700 transcription start site region 32700 within coordinates
Tssr32701 transcription start site region 32701 793 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory