rs253300069 SNP Detail

Summary

• ID
  rs253300069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132650675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTATCC CTGATGCCTC
  TTAACTCAGC AGGCACCTGC ACTCACGTGC ACTTACAAAA GATGGGCAGT TGTAAAATGG
  TAAAACAGTA GAGACCTGAA GCTAGAATTA AAGGCAATAG GAACACGGTG GCCATGATAC
  TCTTGAGATC GGTTGGCTGT GTGTGTATGG AGGCCATCTG TACATGACCC AAAACCTTTA
  W
  TACATTTTAG TTTGTGTGTG TGTCTCTGTG TCCCCCTCAC TTAATATGGA GCTAATTGAT
  CTGTCCGTTC TAGTGTGTGT GAGACTTAGG GATTGGTTTG ATCTCTAGCA CTGGAGAAAG
  AAAAAGAGGT AGGGCATAGG AAGTGAGAGG AAAGAAAGGA ATAGAAAATA TCGATGATCA
  TTCATACAAT AAACCTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363304732	MGP_WTSI_4_132479279	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253300069					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363304732	MGP_WTSI_4_132479279	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132650675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	154 bp distal
Fam76a	family with sequence similarity 76, member A	826 bp upstream
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	384 bp downstream
Rr601111	regulatory region 601111	882 bp distal
Rr601112	regulatory region 601112	316 bp distal
Rr601113	regulatory region 601113	841 bp distal
Rr601114	regulatory region 601114	615 bp distal
Tssr43727	transcription start site region 43727	820 bp upstream
Tssr43728	transcription start site region 43728	801 bp upstream
Tssr43729	transcription start site region 43729	763 bp upstream
Tssr43730	transcription start site region 43730	751 bp upstream
Tssr43731	transcription start site region 43731	738 bp upstream
Tssr43732	transcription start site region 43732	733 bp upstream