rs253298973 SNP Detail

Summary

• ID
  rs253298973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGAAAT GGAGACAAGA
  TAAAACTTGC ATACATTCTT ATGATCACAG ACGGCCCTGG TGGTTTTTGG TAACTATTTA
  CAAGGCATTT TTTTACATAT ATTTTTGTGC ACTTTTTATG TTTCTTTGGA AGACAAATGT
  ATTTCAGAAT ATATTTGTAG TCAATTCATA TATTTGAAGT GGAGCCATAG TAATGCCAGT
  R
  GATATCTCTA TGATCTTGAG CTACTGGCAA CTTGTAAAGA AATATATATG ACATATAAAT
  GTATTGTAGC TTTCCGGTGT CAGCCACGGT GTATTTTTCC ACTTGGAATG AAATTGTATC
  AACTGTGACA TTATATGCAC TAGCAATAAA ATGCTAATTG TTTCATGCTG TAAACCTCCT
  ACCGTATGTG GGAATTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791599	MGP_WTSI_6_117124859	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253298973					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791599	MGP_WTSI_6_117124859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151802 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637289	regulatory region 637289			517 bp distal
Rr637290	regulatory region 637290			769 bp distal
Rr637291	regulatory region 637291			718 bp distal
Rr637292	regulatory region 637292			1502 bp proximal
Tssr58395	transcription start site region 58395			1336 bp downstream
Tssr58396	transcription start site region 58396			1322 bp downstream
Tssr58397	transcription start site region 58397			1287 bp downstream
Tssr58398	transcription start site region 58398			1264 bp downstream
Tssr58399	transcription start site region 58399			1235 bp downstream
Tssr58400	transcription start site region 58400			1202 bp downstream
Tssr58401	transcription start site region 58401			1168 bp downstream
Tssr58402	transcription start site region 58402			1139 bp downstream
Tssr58403	transcription start site region 58403			1121 bp downstream
Tssr58404	transcription start site region 58404			1110 bp downstream
Tssr58405	transcription start site region 58405			1054 bp downstream
Tssr58406	transcription start site region 58406			1025 bp downstream
Tssr58407	transcription start site region 58407			1003 bp downstream
Tssr58408	transcription start site region 58408			940 bp downstream
Tssr58409	transcription start site region 58409			912 bp downstream
Tssr58410	transcription start site region 58410			894 bp downstream
Tssr58411	transcription start site region 58411			863 bp downstream
Tssr58412	transcription start site region 58412			851 bp downstream
Tssr58413	transcription start site region 58413			827 bp downstream
Tssr58414	transcription start site region 58414			805 bp downstream
Tssr58415	transcription start site region 58415			787 bp downstream
Tssr58416	transcription start site region 58416			769 bp downstream
Tssr58417	transcription start site region 58417			715 bp downstream
Tssr58418	transcription start site region 58418			689 bp downstream
Tssr58419	transcription start site region 58419			669 bp downstream
Tssr58420	transcription start site region 58420			634 bp downstream
Tssr58421	transcription start site region 58421			610 bp downstream
Tssr58422	transcription start site region 58422			597 bp downstream
Tssr58423	transcription start site region 58423			576 bp downstream
Tssr58424	transcription start site region 58424			517 bp downstream
Tssr58425	transcription start site region 58425			478 bp downstream
Tssr58426	transcription start site region 58426			460 bp downstream
Tssr58427	transcription start site region 58427			426 bp downstream
Tssr58428	transcription start site region 58428			415 bp downstream
Tssr58429	transcription start site region 58429			337 bp downstream
Tssr58430	transcription start site region 58430			306 bp downstream
Tssr58431	transcription start site region 58431			207 bp downstream
Tssr58432	transcription start site region 58432			126 bp downstream
Tssr58433	transcription start site region 58433			101 bp downstream
Tssr58434	transcription start site region 58434			328 bp upstream
Tssr62617	transcription start site region 62617			1265 bp upstream
Tssr62618	transcription start site region 62618			1242 bp upstream
Tssr62619	transcription start site region 62619			1206 bp upstream
Tssr62620	transcription start site region 62620			1173 bp upstream
Tssr62621	transcription start site region 62621			1089 bp upstream
Tssr62622	transcription start site region 62622			549 bp upstream
Tssr62623	transcription start site region 62623			529 bp upstream
Tssr62624	transcription start site region 62624			383 bp upstream
Tssr62625	transcription start site region 62625			244 bp upstream
Tssr62626	transcription start site region 62626			179 bp upstream
Tssr62627	transcription start site region 62627			134 bp upstream
Tssr62628	transcription start site region 62628			2 bp upstream
Tssr62629	transcription start site region 62629			160 bp downstream