rs253255379 SNP Detail

Summary

• ID
  rs253255379
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154940261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGCTGAT CACCCGAGCG GCCGCCACCT
  TCTTCCAGGA TGGACCAGCT GGGGACATGC TGCGGGACCT ACAGGAGGCC TTCTGCGAGA
  GCCCCGCCGG CGCACGGAAG CAGTTCCAGG CCCTGCTGTC CGCGGAGGAC CGCGAACGCC
  K
  GCAGGCACAG GCGCAGGAGG CCGCGGGCCT GGGCTTTGCC CGCTTCCTGG AGGCTGTGCG
  AAGCCGCGAG CTGCGCCGGG ATGCGGACCG CGAGCTCTTG GTTCCCGTGA CGCGCGCGCT
  CCGCGTCCTG CTTCGCGTGG CACCTGCCCG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321440200	CHEV_4_154229913	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253255379					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154940261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15447	CpG island 15447	within coordinates
Rr606279	regulatory region 606279	within coordinates
Rr606280	regulatory region 606280	576 bp proximal
Rr606281	regulatory region 606281	1256 bp proximal
Ttc34	tetratricopeptide repeat domain 34	Coding-NonSynonymous