rs253252945 SNP Detail

Summary

• ID
  rs253252945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128083290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGGACA CTGAGCCAGC
  CACAGGATGC TAACAGGGAT TGTTAACATT TAATTTTTAT TTCTTGTTCA CACTGCTATC
  CAACTGTTTC TTCTTAGGAC AGAACGTCTT CCTTGAGAGT GAATTTTGGT GCAGATAAAG
  CAGAAAGGAA GAGTTGGGAG GGAAGAACAG AGGGGGAGGG GAGGACAGAG GGGAGGGGGT
  R
  TTTCTTCTCA GGCTTTAAAC GCTGTTGTTG CCTGCAAAGG GTTTGTCCTA AATGACATCA
  TCCGAGTGCC TGCTGTGTAC CTCTGGGACA AACAGACTAG ACAAAGGAAC CTGGTGAGAC
  TGGAATCTCT GGGCCTCCAG CAGGCTGACA AAGAGCAAAG CTGCTGTCCT CATGGGGTCT
  AGCTGCTCTG CGACCTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320501965	CHEV_2_128067106	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253252945					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128083290 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	within coordinates
Rr373833	regulatory region 373833	within coordinates
Rr564683	regulatory region 564683	696 bp distal
Rr564684	regulatory region 564684	236 bp distal
Rr564685	regulatory region 564685	within coordinates