rs253247215 SNP Detail

Summary

• ID
  rs253247215
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152101683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA GCGCCGCGGC GCCGCTGTGG
  M
  GCTTCCTGCG GCGGAGGGCG CTGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss916518062	MGP_WTSI_3_152396046	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	C	A	A	A	C	A	C	C	C	C	C	A	A	A	A	A	C	C	A	A	A	A	A	C	C	A	C	C	C	A	C	C	C	C	A	A	C	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253247215					SNP	A	A	C	C	A	A	A	C	A	C	C	C	C	C	A	A	A	A	A	C	C	A	A	A	A	A	C	C	A	C	C	C	A	C	C	C	C	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916518062	MGP_WTSI_3_152396046	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152101683 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43857	predicted gene 43857			1806 bp upstream
Gm66519	predicted gene, 66519			1369 bp upstream
Rr587542	regulatory region 587542			563 bp distal
Rr587543	regulatory region 587543			within coordinates
Rr587544	regulatory region 587544			124 bp distal
Rr587545	regulatory region 587545			64 bp distal
Rr587546	regulatory region 587546			4 bp proximal
Rr587547	regulatory region 587547			148 bp proximal
Rr587548	regulatory region 587548			194 bp proximal
Rr587549	regulatory region 587549			229 bp proximal
Rr587550	regulatory region 587550			651 bp proximal
Rr587551	regulatory region 587551			659 bp proximal
Rr587552	regulatory region 587552			1651 bp proximal
Tssr32410	transcription start site region 32410			557 bp downstream
Tssr32411	transcription start site region 32411			within coordinates
Tssr32412	transcription start site region 32412			15 bp upstream
Tssr32413	transcription start site region 32413			316 bp upstream
Tssr32414	transcription start site region 32414			618 bp upstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant