rs253245235 SNP Detail

Summary

• ID
  rs253245235
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141408393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATTCCTA GGCACCCTCT
  TGCCAAAGTA CTGTTTTGGG CTGTCTCTCC CCTTTCCTGC CTCTGGAGAT AATCAGAGGG
  AGCAGGCTTC GAGGCAGAAG GTCTCACACA TTCCTGACCG TCTACTAAAG CTTCCTTCGC
  CAAGTTCCTA CTCTCATCCC GACCCGTCGA CATCTGAAGC TCAGCCCGCC AGATGCAGAC
  T
  TCGGCTGCTG CAGAGGGCTG AACTAGCACA TCTGGAAGCG GCCGTATCTC CAGCCCTTCA
  GCTTGAGTGT GAGCTTTACA AGAAAATCCT TTGGTGCATA AATGGAGACC ACTGCTGGAG
  GAAAGCAGTC ACCACAGAAC GCCCTGACAG TGGTCTGGCC GAGGAGCTGC CCTTGCTGTT
  ACAGTTGGGA TCTGACAGGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388962	CHEV_4_141236997	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253245235					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141408393 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	810 bp downstream
Rr603857	regulatory region 603857	1737 bp distal
Rr603858	regulatory region 603858	711 bp proximal
Tssr44357	transcription start site region 44357	1531 bp upstream