rs253236399 SNP Detail

Summary

• ID
  rs253236399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAGGGC CTGGCGTTTT
  ACATCTGTAA TCCTGGTACT TGTGAGGCTG AGGCATGGGG ACCAAGAATT CAAGGCAAAG
  TCTAGGAGAG GATGGCCTGG GCTCCCTAAG ACTGGCTACA CACAAAAAAC CGTCTTGCTC
  CTGATTATTT GAAAAGGTGA AAGGAATTTC ATGTCTCTGG TGTTTTGTTG TTGTTTTTTT
  K
  TTTTTTGGTT TTGTTTTTGG GGGATTGGTT GGTTGTGTTT TCCCCCAAGT GGTGATAGTG
  GTGTTGGGGG AGGGGGGCTG CTTTTTGGTT TTGTTGGTTT TGGTTTTACT GAGGTCAAAT
  GAGCAGTCCC TTCAAACCTA ACTGCCAAAC CCTAACAGAG ATCTAGCCAT CAGCATCTCT
  AGGATGTTTT AATTTGCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	DBA/1J	DBA/2J	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
ss369251543	MGP_WTSI_6_94235492	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	T	G	G	G	T	T	T	T	T	G	G	G	G	T	G	G	G	T	G	G	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	DBA/1J	DBA/2J	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
rs253236399					SNP	G	G	T	T	G	G	G	T	T	T	T	T	G	G	G	G	T	G	G	G	T	G	G	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369251543	MGP_WTSI_6_94235492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	673 bp distal
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	1581 bp upstream
Rr634856	regulatory region 634856	1686 bp distal
Rr634857	regulatory region 634857	1468 bp distal
Rr634858	regulatory region 634858	921 bp distal
Rr634859	regulatory region 634859	456 bp distal
Rr634860	regulatory region 634860	1156 bp proximal
Tssr62172	transcription start site region 62172	1957 bp upstream
Tssr62173	transcription start site region 62173	1896 bp upstream
Tssr62174	transcription start site region 62174	1707 bp upstream
Tssr62175	transcription start site region 62175	1678 bp upstream
Tssr62176	transcription start site region 62176	1652 bp upstream
Tssr62177	transcription start site region 62177	1562 bp upstream