rs253233902 SNP Detail

Summary

• ID
  rs253233902
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59803925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGATGCC TCTGACAGAC CAGGAAAGTA
  AATAAAGAAA CTTTCCCTTT AGGAACCTGG tccttccttc cttccttcct tccttccttc
  cttccttcct tccttccttc cttccttcct tccgtcattc cttctctctc tctgtcgctt
  K
  ctttctttct ttctttcttt ctttctttct ttctttcttt ctttctttct ttctttcttt
  ctCCTCTCTC CTCCTCTTCC TCCCCATCCT CTGTGGGGAG ACATGAAACA GTTTCATTCT
  GACTCAAACT AAGGACATGG AGTTTGGAAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141406	CHEV_4_59816797	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253233902					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59803925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14351	CpG island 14351	1370 bp proximal
Rr398296	regulatory region 398296	218 bp downstream
Rr593142	regulatory region 593142	71 bp distal
Rr593143	regulatory region 593143	1425 bp proximal
Snx30	sorting nexin family member 30	1915 bp upstream
Tssr37446	transcription start site region 37446	1078 bp upstream
Tssr37447	transcription start site region 37447	1904 bp upstream