rs253221198 SNP Detail

Summary

• ID
  rs253221198
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74794152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCAAGAG CTAGCTATGC
  AATAACCAAC CCAGCAAGAA AATCTTTACA AGAAAATGAA AAAAAAAAAA ACCCAACCTA
  TCAAATTAAA AAAAAAATCC ATAACAAGTT TTAAATGAGA ACGCTGCCCA AATGTGTCTA
  CTGAGCTGCG AAGCATACAT GAGGCAATGA GCTAAACTGT CTAATTGTAT CTGAAAGAAA
  T
  AAATACATAA GTTATTTAAA ATATTTAGTT AGGTGTAGTT GTGCCTGCCT GTAATCCAAG
  TATTGGGGAG TCTGAGGCAA GAGATTACAA TAAAGCCACT TGAGTCTCAA CTTATGATTC
  TGGGTTTGAA GGCACCATTC TGTATGTTCC TAAATTATTT GTTTTCAAGA TGTTTTAGGT
  CTGTATAAAA TGGGGCTAAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348850	CHEV_2_74801865	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253221198					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74794152 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	1648 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	460 bp proximal
Rr559414	regulatory region 559414	726 bp proximal
Rr559415	regulatory region 559415	1292 bp proximal
Rr559416	regulatory region 559416	1667 bp proximal