rs253167343 SNP Detail

Summary

• ID
  rs253167343
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83753159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGATC CTAATTTTCT
  GGGAGAGGAA GATTCCCTTC TCTCAGGTCA CACACTAGGA AGCCGCATAA TCTGGAATCC
  CAGGTGCCTT TAAATGGTCA CCTTCAGCCT TAACTCTCCC TCTAGGCTGA GGTCTTTTGC
  AATGCAGGTC TTCACTTTTG CGTGGGGACT AAAGCAACAG CTAAGCACTG ACTGTACTTG
  M
  GACACCGCAG GTAATCATCT GAGAGAGCAC CACCTAGTGG CTGACACAGG TAAGCTCAGA
  GTGCCAACAA GCCTCTTATC TCAAACAAAC TTTTTGTTTG TTATTTTCAG AAAGGGAGGG
  TCTCATAGCT CAGGCTGGCC TTTGAACTGT CAACTCTCCC ATCTCCAGCT CTCAATTGGT
  AGGGTTTCAG ATGTGTGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039083	MGP_WTSI_6_83726171	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253167343					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039083	MGP_WTSI_6_83726171	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83753159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	within coordinates
Gm52907	predicted gene, 52907	within coordinates
Rr632937	regulatory region 632937	1731 bp distal
Rr632938	regulatory region 632938	487 bp distal
Rr632939	regulatory region 632939	282 bp distal
Rr632940	regulatory region 632940	within coordinates
Rr632941	regulatory region 632941	24 bp proximal
Tex261	testis expressed gene 261	364 bp upstream
Tssr1911	transcription start site region 1911	236 bp downstream
Tssr57375	transcription start site region 57375	526 bp downstream
Tssr61705	transcription start site region 61705	608 bp upstream
Tssr61706	transcription start site region 61706	597 bp upstream
Tssr61707	transcription start site region 61707	580 bp upstream
Tssr61708	transcription start site region 61708	562 bp upstream
Tssr61709	transcription start site region 61709	501 bp upstream
Tssr61710	transcription start site region 61710	418 bp upstream
Tssr61711	transcription start site region 61711	351 bp upstream