rs253166043 SNP Detail

Summary

• ID
  rs253166043
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132739373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGACAGG CAGACAAACA
  GACAGACAGA CAGAGCGGGA GGGAGGAGGG CGGCGGAGGA GGAGCAGGAG GACTACGCGG
  GGCGTCTTCC CTCCCAGGTT TGCAATTGGG GGGTTGGGGC GGGGGTGTCC AGGGCTGTGA
  GAGTGTGTGA GCGGCTGGGG AAGCGAGTGG GGCGCAGATA GCGAAGGAGT AATCGTGGTG
  K
  GGGGGACGCC GCGGGAGCGG GGGGCCGTGT CCAGCGGAGT TAGCGGCGGA GAATGTGAGC
  CGAGGCGCGA GCCATGCTGT CAGCGACGGC AGGCGGCTCA GGGCTCCTCT ACGACTCCTC
  TTCCCAGCAG CCGGGCGCCC GTGTCGCTGC CGCCGGCGGA AGATAGACGC CCCCCGAAAC
  CCCTCGCCTG GCTCGGACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338145	CHEV_4_132567977	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253166043					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132739373 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982			within coordinates
Rr601154	regulatory region 601154			546 bp distal
Rr601155	regulatory region 601155			372 bp distal
Rr601156	regulatory region 601156			within coordinates
Rr601157	regulatory region 601157			153 bp proximal
Tssr39436	transcription start site region 39436			570 bp downstream
Tssr39437	transcription start site region 39437			516 bp downstream
Tssr39438	transcription start site region 39438			240 bp downstream