rs253162991 SNP Detail

Summary

• ID
  rs253162991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89209921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAACAGG GTTTCTCAAG
  CCGGGCGTGG TGGTGCACAC CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGTGGATTT
  CTGAGTAGAG GCCAGCCTGG TCTACAGAGC GAGTTTCAGG ACAGCCAGGG CTACACAGAG
  AAACCCTGTT TTTTTTGTTT TGTTTTGTTT TTTTGTTTTT TTGAGACAGG GTTTCTCTGT
  R
  TAGCACTGAC TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCCTCTACT CAGAAATCCA
  CCTGCCTCTG CCTCCCAGGT GCTGGGATTA AAGGTGATTG CCACCACCAC CCAGCTATAA
  TTTCTATTTT CATTCACTGC AATGGAATGT CTAAAGGCTG TCGTAGGGTC AATCTAAGGA
  ACGTGGCTAC TGAAAGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358810290	MGP_WTSI_3_89106536	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253162991					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358810290	MGP_WTSI_3_89106536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89209921 () rs orientation: forward

Symbol	Name	Function Class
Gm22642	predicted gene, 22642	Noncoding-Transcript-Variant
Gm33845	predicted gene, 33845	within coordinates
Gm34014	predicted gene, 34014	426 bp upstream
Gm65883	predicted gene, 65883	within coordinates
Rr580029	regulatory region 580029	1866 bp distal
Rr580030	regulatory region 580030	1882 bp distal
Rr580031	regulatory region 580031	1558 bp proximal
Rr580032	regulatory region 580032	1909 bp proximal
Tssr30089	transcription start site region 30089	248 bp upstream
Tssr30090	transcription start site region 30090	273 bp upstream