rs253143841 SNP Detail

Summary

• ID
  rs253143841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13840294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAAAGA CCAACGTTAG
  TAATACTGAA ATAATGTTGA ATTGCCCTGA TTTGATTGGA GATTTTTTTT AGCCAATTAA
  AAAAATAATG ATTAGCTGTG GGGTGTGTGT ATGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT CTGTTCTTTT GGTTATCCAT AAAACATTTG CTTAGGCATC TTAGGAGAGT
  Y
  AATCCTACAA CAATACTGGA AGTAACTTGA AAATATTTCC ACCCAAGGGA GACACCCTGG
  TTTTTGTGAA ACACGACTCA GAAGAACTCA AAACCATATG ATGGGTACAA CTTTTAAGTA
  AAATCTCAAA TTTGTTTTTT ATGAAACTAC AGATTAATTT TCTACTTAAA TTTTCTACTT
  CTCAATGCGT TTTGCAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440169	MGP_WTSI_6_13790295	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253143841					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440169	MGP_WTSI_6_13790295	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13840294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17167	CpG island 17167	1115 bp distal
Gpr85	G protein-coupled receptor 85	353 bp upstream
Rr626595	regulatory region 626595	1351 bp distal
Rr626596	regulatory region 626596	within coordinates
Tssr54956	transcription start site region 54956	1594 bp downstream
Tssr54957	transcription start site region 54957	1553 bp downstream
Tssr59843	transcription start site region 59843	1853 bp upstream
Tssr59844	transcription start site region 59844	1677 bp upstream
Tssr59845	transcription start site region 59845	1606 bp upstream
Tssr59846	transcription start site region 59846	1085 bp upstream
Tssr59847	transcription start site region 59847	955 bp upstream
Tssr59848	transcription start site region 59848	857 bp upstream
Tssr59849	transcription start site region 59849	785 bp upstream
Tssr59850	transcription start site region 59850	761 bp upstream
Tssr59851	transcription start site region 59851	387 bp upstream
Tssr59852	transcription start site region 59852	354 bp upstream