rs253133117 SNP Detail

Summary

• ID
  rs253133117
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATACTTCT GAAATAGTTA
  CAAGAATAAT CTTAAATCCT GTAATGACAA TAACTTATTC AATTACACAA TTAAGTTTTG
  CTGGCTAGAT TATTTTATAA GTTTTTTTTT GAAGGATCAA TTTGCCTTTA CCTCAGCTTA
  AAACAAAACA AAAAAGTTAT CCTTTCCATA TATTTTCATA TATATATATA TATGTATATA
  W
  AACATATATT TCCATAATGT TAGTTTTTAA TGTGAATATT ACACATCTGC CTCCAATTAA
  TATAAATGTG TTTCTGTAAT AACATATGCA TGTAGGGAAA TGTGCATGTA ATAATGTTTA
  CATCTGTCCA TATCACATTT AGCTTTCATG CCTTAATCCA CAATGACAGG GCTGATGTAT
  TCTTTGTGGA ATGGTTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss378552002	MGP_WTSI_9_95310309	EVA_MGPV3	EVA_MGPV3	r	SNP	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs253133117					SNP	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378552002	MGP_WTSI_9_95310309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291943 () rs orientation: forward

Symbol	Name	Function Class
Gm8449	predicted gene 8449	779 bp downstream
Gm35915	predicted gene, 35915	1336 bp downstream
Gm37805	predicted gene, 37805	1322 bp downstream
Rr684791	regulatory region 684791	1606 bp distal