rs253121436 SNP Detail

Summary

• ID
  rs253121436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108471341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAAAAT ATACTCAAAT
  TAAGAAATTA CAGCATCAAA AACCAAAAGA TATATAGAAA AACCCTAACA TAATCACTAA
  TATAATCACT TGGATTACAT ATGTGTGTAT ACACACAGGA CATTCCACAA AGCAAGACAG
  GACTGCAGAG ATGGCTTAGT GGTTGACAGC ATTTGCTTCT CTTGTTAAGA CCTTCGTTAG
  R
  TTTCCAGCAT CCAAGTGATG GCTCACAACG ATATGTTCCT CTGGTTCCAG GAGATCCTGT
  TGTAGAAATA ATAATAAAAA TTGTTCCTCA CACTTAGAGA TGAAGGCAAA GATCTGTACT
  AAAGTGCCTG GCTGACTGTG GTTAATGCCT AAATTAGAGT CAGCCTTGAC AGGATTGTAC
  TAACTGGTAG CTTCAGTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359167842	MGP_WTSI_3_108366943	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253121436					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359167842	MGP_WTSI_3_108366943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108471341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	1332 bp distal
Gm65656	predicted gene, 65656	within coordinates
Rr367532	regulatory region 367532	1447 bp downstream
Rr397938	regulatory region 397938	1191 bp downstream
Rr583265	regulatory region 583265	1866 bp distal
Rr583266	regulatory region 583266	1069 bp distal
Rr583267	regulatory region 583267	1152 bp distal
Rr583268	regulatory region 583268	478 bp distal
Tmem167b	transmembrane protein 167B	1559 bp upstream
Tssr35153	transcription start site region 35153	1847 bp upstream
Tssr35154	transcription start site region 35154	1679 bp upstream
Tssr35155	transcription start site region 35155	1608 bp upstream
Tssr35156	transcription start site region 35156	1587 bp upstream