rs253121030 SNP Detail

Summary

• ID
  rs253121030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110253011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTAGTGA CAGTCAAAGA
  TTAGTCTGGT GGTCTCAGAT GTACTTTCAG ACTGTTTGTG ATTGTGTAAG GTCTTGCTTC
  AGAGCACCCA CCTGTCGGTG TACAATAGAC ATTCAGTTAG ATGCTTGCCA GGCTGACCCC
  CCCCACCACT TGCTCCCATT CCCTATACAA CCTTGTCCGG ATGAGAGTTC GAGGCTGCTT
  Y
  ACCAAACCAT CCTGTGAGGC AGCGGTGAGT AGGTCCAAAC TTGAGTTTGT GATAAAGAGA
  CCCTAATGTG ATTACATTGG TGTCGGCTCC TTGGTTGTCT TTTGGGGTTC ATGAACACTT
  CCTGGCACAA CACTGGATAG CCCAGGCTGA TGTTAGACTC ACATCAATCC AACTTCAGCC
  TCCCCAGTGT TCAGATTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902816	MGP_WTSI_9_110326447	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253121030					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902816	MGP_WTSI_9_110326447	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110253011 () rs orientation: forward

Symbol	Name	Function Class
Klhl18	kelch-like 18	1983 bp downstream
Ngp	neutrophilic granule protein	931 bp downstream
Tssr3023	transcription start site region 3023	1561 bp upstream
Tssr3024	transcription start site region 3024	1543 bp upstream
Tssr3025	transcription start site region 3025	1454 bp upstream
Tssr3026	transcription start site region 3026	1405 bp upstream
Tssr3027	transcription start site region 3027	1308 bp upstream
Tssr3028	transcription start site region 3028	1242 bp upstream
Tssr3029	transcription start site region 3029	1226 bp upstream
Tssr3030	transcription start site region 3030	1215 bp upstream
Tssr3031	transcription start site region 3031	1023 bp upstream
Tssr87368	transcription start site region 87368	1665 bp downstream
Tssr87369	transcription start site region 87369	1647 bp downstream
Tssr87370	transcription start site region 87370	1597 bp downstream
Tssr87371	transcription start site region 87371	1569 bp downstream
Tssr87372	transcription start site region 87372	1499 bp downstream
Tssr87373	transcription start site region 87373	1459 bp downstream
Tssr87374	transcription start site region 87374	1437 bp downstream
Tssr87375	transcription start site region 87375	1414 bp downstream
Tssr87376	transcription start site region 87376	1408 bp downstream
Tssr87377	transcription start site region 87377	1394 bp downstream
Tssr87378	transcription start site region 87378	1343 bp downstream
Tssr87379	transcription start site region 87379	1298 bp downstream
Tssr87380	transcription start site region 87380	1081 bp downstream
Tssr91619	transcription start site region 91619	1613 bp upstream
Tssr91620	transcription start site region 91620	1509 bp upstream
Tssr91621	transcription start site region 91621	1430 bp upstream
Tssr91622	transcription start site region 91622	1368 bp upstream
Tssr91623	transcription start site region 91623	933 bp upstream