rs253117403 SNP Detail

Summary

• ID
  rs253117403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113580094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    actgggtag acttggaaca ctatgaaacc
  tcaaagccca cgcccacagt gacacaccca ctccaacaag gccacacctt ctaacagagc
  ctctccccca tgggcctagc attcaaactt ttattcaggc cagacctatt caaaccacca
  Y
  aCATGGACTG ACTAGACCAT TGTTTGGACA AGCCttcttc tgccttagtc tcttgagtgc
  tgaaattata agcatgtacg actacgttcC TTTAACGATT TTTTTTTAAT GAAACGATTA
  GGTAAAAAGG TTGGAGATTA TTTTTGCAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911093	CHEV_6_113553127	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253117403					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113580094 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	1639 bp upstream
Cpgi17850	CpG island 17850	1242 bp proximal
Gm67049	predicted gene, 67049	within coordinates
Rr379958	regulatory region 379958	1754 bp downstream
Rr636549	regulatory region 636549	1149 bp proximal
Rr636550	regulatory region 636550	1373 bp proximal
Rr636551	regulatory region 636551	1592 bp proximal
Tssr58230	transcription start site region 58230	1616 bp upstream