rs253103616 SNP Detail

Summary

• ID
  rs253103616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95903537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCGGATA ACCGGGAGGC
  GCGGCGGTGG GGGCGGGCCC GAGGCGTGGC GAGCGGGATG GAGCGGAGGC GCCGTGGGAG
  AGCGGCCGCC TCGGACCCGC AGACTCCGGC TGGCGGAGCC CCGGGAGTCT CCACTCTCGA
  CCTACTGCCG GGCGGACGTG AGCGCCCCGC GAGGCCTGCG GTAAACACGC GTGCAGCGGC
  R
  GGGAGGCCCG GAGGACGCTC GGACCGCGAG CTCTTCTGAG TCCTGTGTTT CTGATGTGGC
  TTGGAGGGAG CCCAAGTTTG AGCGCGGCTT TCCTCACCAC TCCTGGGTCT CTGTTCCCCT
  ACCTGGTAAA AGGAGGATCA GCTGACCCAT GAAAGCCCGC GAGGACCCAA CTGTGTCTTT
  TAGGTTCAAT TACTACCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358911538	MGP_WTSI_3_95800148	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253103616					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358911538	MGP_WTSI_3_95800148	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95903537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13533	CpG island 13533	within coordinates
Gm9052	predicted gene 9052	within coordinates
Gm65578	predicted gene, 65578	878 bp downstream
Plekho1	pleckstrin homology domain containing, family O member 1	279 bp upstream
Rr581114	regulatory region 581114	1725 bp distal
Rr581116	regulatory region 581116	within coordinates
Rr581117	regulatory region 581117	1095 bp proximal
Tssr30674	transcription start site region 30674	221 bp downstream
Tssr30675	transcription start site region 30675	99 bp downstream
Tssr30676	transcription start site region 30676	65 bp downstream
Tssr34578	transcription start site region 34578	566 bp upstream
Tssr34579	transcription start site region 34579	533 bp upstream
Tssr34580	transcription start site region 34580	503 bp upstream
Tssr34581	transcription start site region 34581	423 bp upstream
Tssr34582	transcription start site region 34582	404 bp upstream
Tssr34583	transcription start site region 34583	368 bp upstream
Tssr34584	transcription start site region 34584	270 bp upstream
Tssr34585	transcription start site region 34585	215 bp upstream
Tssr34586	transcription start site region 34586	1087 bp downstream