GCCAAAAAGG AAAAAGAAAA AAAGGCAAAT GACAAATAGA ATTTACTGGC GATCTACTAT AAGCAAAATC TCTAAAAGAT GCTGTCCATT CTAACTGTCT TTAAAATTTC CTTTCTTATA ATACAATATA ATTGAAGGGA GAAACAGTGT GCTATAAAGG GTAAAGAAAT ACTAAGCAAT AGAAAAAAAT AAGAATACTT K ATTTTACGAA ATGAATACGG GACCTAGGGC AATGGCTCAG GCCTGGTACT TGGAAGTCTG AAGCAGGAAG ATCATGAGTT AAAGGCAAGA CTGAACAATT TAGAAAGGCC CTGCCATAAA CAAGCACACA AATAAACGAA TGAATGGATG GATGGATGGA TGGATGAATG GCTGAGGCTC ACTGATTGGA GTCTAGACCA K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss357153105 | MGP_WTSI_3_19209896 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | T | G | T | T | T | T | G | T | T | T | T | T | G | T | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs253096362 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | T | G | T | T | T | T | G | T | T | T | T | T | G | T | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss357153105 | MGP_WTSI_3_19209896 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | G/T |
Location: Chr3:19364060 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
3110037C07Rik | RIKEN cDNA 3110037C07 gene | 986 bp upstream | ||||||
Cpgi13002 | CpG island 13002 | 548 bp proximal | ||||||
Gm66414 | predicted gene, 66414 | 1741 bp upstream | ||||||
Pde7a | phosphodiesterase 7A | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr573969 | regulatory region 573969 | within coordinates | ||||||
Rr573970 | regulatory region 573970 | 1416 bp proximal | ||||||
Rr573971 | regulatory region 573971 | 1752 bp proximal | ||||||
Tssr28510 | transcription start site region 28510 | 796 bp upstream | ||||||
Tssr28511 | transcription start site region 28511 | 952 bp upstream | ||||||
Tssr28512 | transcription start site region 28512 | 1544 bp upstream | ||||||
Tssr28513 | transcription start site region 28513 | 1585 bp upstream | ||||||
Tssr32696 | transcription start site region 32696 | 1347 bp downstream | ||||||
Tssr32697 | transcription start site region 32697 | 1373 bp downstream | ||||||
Tssr32698 | transcription start site region 32698 | 1437 bp downstream | ||||||
Tssr32699 | transcription start site region 32699 | 1453 bp downstream | ||||||
Tssr32700 | transcription start site region 32700 | 1493 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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