rs253092983 SNP Detail

Summary

• ID
  rs253092983
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76353299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAAACAG AACTCCTGGT TTAACACAAC
  AAAACCCCAT CAGGCACATT CCACCCATGC AAGAATCCTT TAGGCAATAA ACACATTTTT
  TTTTTTGTAA CAGAGACACC ATTTTCTCGA ATTAAACGTC TGGCGGGACA AAGTTAACTG
  W
  TGTGAGGCAA TACAAGATTA TTATAacaca cactcacaca cacgcacacg cacacacaca
  cacacacaca cacacacaca cacacacaca GTGAAAATAG CAGGCTTTGT TCTTGggctc
  agtaggtaat accaaggccc ttgtcaccca                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170923	CHEV_4_76080966	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253092983					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76353299 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			705 bp proximal
Tssr42160	transcription start site region 42160			730 bp downstream
Tssr42161	transcription start site region 42161			801 bp downstream