rs253092452 SNP Detail

Summary

• ID
  rs253092452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118223340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAATGTT TCTCAAAAAG
  GCATCCTGAT CTGATTTCAA TAAGTCATAG AGGGTACCTG GAAAAAATAA CCCCTAGTCA
  AAGCTAGTGG TATTTACTAG ATTGTTTTTA TATACAGCAT ATGCTTTGCA TGTATTTTGA
  TCACAGTAAG AAAACGCATG ATAGTTTTTT TTTTTTTTTA AGAACTGCTA TATAAGTGCT
  Y
  CTTTTCTTTT CTGTGACAGT TTGGTGCTGA TTTTAAAAAT TAAAAATTAA AAAAAAAGGC
  TTTAAAGGCA TCATTTTTTT TCTCTCCAGT ATGCTAAAGA TGTTGTATAT ATCTTTTTTG
  CTTTTCTTTA AGGAAAGAAT ATGGGGGTTG CTTACACAGG GAATGAAAAT TCTATTCTCC
  AACCCCCCCT CCCATTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359403771	MGP_WTSI_3_118132609	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253092452					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359403771	MGP_WTSI_3_118132609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118223340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13749	CpG island 13749	551 bp proximal
Gm26871	predicted gene, 26871	405 bp upstream
Rr583891	regulatory region 583891	697 bp distal
Rr583892	regulatory region 583892	967 bp distal
Rr583893	regulatory region 583893	114 bp proximal
Rr583894	regulatory region 583894	681 bp proximal
Rr583895	regulatory region 583895	898 bp proximal
Rr583896	regulatory region 583896	1789 bp proximal
Tssr31405	transcription start site region 31405	350 bp upstream
Tssr31406	transcription start site region 31406	608 bp upstream
Tssr31407	transcription start site region 31407	725 bp upstream
Tssr31408	transcription start site region 31408	1728 bp upstream
Tssr31409	transcription start site region 31409	1802 bp upstream
Tssr31410	transcription start site region 31410	1835 bp upstream