rs253083734 SNP Detail

Summary

• ID
  rs253083734
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGACAGA CTCAAACTCA TCAATGAGAA
  AAACTTTAAA TAATAGCATA GGTGGgcccg gcagcggtgg tactcagctt ttatatcaac
  acttgggagg cagaggcagg agattggagg tcagactggt ctacagagtg agttccaaga
  S
  agctggagct acccagagaa accctgtctt gaaaaaccaa aaAGCAAAGG CAGAAGGGGA
  AATATGGCAA GCCCGTGGAG ATCTTAAGAG AAGAAATTAA ATTTAAGTAC ACTCaaaaaa
  aaaaaaatat atatatatat atGAggctca                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911148	CHEV_6_113573263	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253083734					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	402 bp proximal
Rr636555	regulatory region 636555	312 bp proximal
Tssr58233	transcription start site region 58233	719 bp upstream
Tssr58234	transcription start site region 58234	779 bp upstream
Tssr58235	transcription start site region 58235	857 bp upstream
Tssr58236	transcription start site region 58236	1398 bp upstream
Tssr62461	transcription start site region 62461	259 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	725 bp upstream