rs253080867 SNP Detail

Summary

• ID
  rs253080867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131859923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGAGCAA CAACCCTGAG
  CCCTGTCACA GGACGAGGCA TCTGGGAGAG TAAGGCTCAG CTCGAGGCCC CACAACCCTG
  TCTAACCTTT ACCTTTGTAC GTCAGCTCAG CTAAACGACA GTATCCAGCG ATCAAACTCA
  GGTATGGCTG GGAAGGAGTT TTGTAATCAG CTGAGTTTAA ATGAAGGAGA TTAACCTTAG
  Y
  CACCTGTGGG AGCAATATCT GAAGAACAAC CCCAAGGGCC TCTCAGGTGG CTCAGAGGGC
  AAAGGTGACT GGCACCCAAC AACGCAAGCC TGATAACCTG AGCTTGGTTC TTGGAACCCA
  GGTAAAGGTG GAAAGAGAGA ACTGATTCTA CCGAGTTGTC CTCTCACTCA GGCTGTGGAA
  TGTGCCATCC CCCACGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321330920	CHEV_4_131688527	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253080867					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131859923 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr600881	regulatory region 600881	within coordinates
Rr600882	regulatory region 600882	1630 bp proximal