rs253058731 SNP Detail

Summary

• ID
  rs253058731
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148025228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATTCAG TTAAATATAG
  TTTACAGAAA CAGTACGTTC TTATTTTTTA ACTTTAGGGC TGTTGAAACC ATCAGCAGCA
  AACGAGGCGC AGCACATGTT GGGTTTGGCT TGCTCTCTGA CTTTCTTTTC TTGCTCTCTT
  TTTTCCAACA AGCCGTTTGG ACTCCTGCCC ACACTCTTCC CTTCCCCACC CCGCCCCTCA
  S
  TCCAGGCCCC GCCCCCAAGG AGACCCCGCC CCCTCTCCAA ATCCCGCCCC TGGCCGCTTT
  TCCACCTTGT CGCAAAAGAC TCAGCGACGC CTTACGGCCG GTGGCGTTTG ACGTCTAGGA
  GGCAACCAAG AAGAAGGAGG AAGCGGTGAA GGTGTCTGCT GGGGTGGCTG CGGCGGGCGT
  TGAGGAGGGC GCGGCGACGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321415875	CHEV_4_147314880	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253058731					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148025228 () rs orientation: forward

Symbol	Name	Function Class
2510039O18Rik	RIKEN cDNA 2510039O18 gene	mRNA-UTR
Cpgi15285	CpG island 15285	within coordinates
Rr398852	regulatory region 398852	within coordinates
Rr604528	regulatory region 604528	1682 bp distal
Rr604529	regulatory region 604529	within coordinates
Rr604530	regulatory region 604530	81 bp proximal
Tssr40235	transcription start site region 40235	88 bp upstream
Tssr40236	transcription start site region 40236	155 bp upstream