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rs253057512 SNP Detail
Summary
  • ID
    rs253057512
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr2:79528074 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCCATGTAT ATCCATCAAT
    AACAGTAAAT ATTAATAATT AGTTTCATGT GTATATGTTC ATATATGTGG GTGCACACGT
    GTGTGGGTAC CTGTGTGTAC ATGTATGCAT AGTCATGAAG AGGTGAGAGG CCAATCACCT
    TGGTTTTTAT TCTATCTTTA GTTTGAGACT GGGTTACTCA GTGGTCTGAA ATTTTGCCAA
    W
    TATGCTAGAT TATCTTACCA TTGATTTCCA AGGGTCCATC TTCACCTGCC CTTATCACCA
    ACACTCGGAT CACAAGTGGG CGCCACTGGG CACAGCCTTT TCTGTGGTGT CTGGGCATCC
    AGACTCAGGC TTTTATGTTT GAGAGGCAAG TGCTCTACTG CCTAAGCCTT TGCTCCTGCC
    CCCAAATTAC TTTTCAACTG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320361098 CHEV_2_79537887 CHEVERUD SCREENING_POP f SNP T A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs253057512 SNP T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79528074 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11846 CpG island 11846 1522 bp distal
Rr560025 regulatory region 560025 1417 bp distal
Rr560026 regulatory region 560026 66 bp proximal
Rr560027 regulatory region 560027 523 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory