rs253041947 SNP Detail

Summary

• ID
  rs253041947
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30562905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGCCT TACGGAGCAG
  CGTTCTCGGC TGGCCGCGCG CCCTCCACGC CCGGGCCTGA GAACGCCGGC GCGGCCTCCG
  CTCTCCCCAC CTGCCGAGTG ACTCTGCGGA GCCGAGAGCT CGGCGCTGCC GGGGTTCCCC
  CCACCCATCC CCAGGACCGT GTCCCCCCCG GCCCCCCTGC CTCCCCTTCC CCAGGGCTCC
  C
  GCCGCGTCGC ACACGCCGCC GCGTACAAGG ACCGAGCGCA CAGCGCCCAC TACCGCAGCC
  GCGGCTAGGC GCAGCGCCGA TCGCCCGCGC AACTTGCAAG CGGCCGCCTC GCAACTTTTC
  CCAACTCCAT CGCGGCCGGC TGCGGCCACA GCCACCGCGG CTCCCTCGGA GCCCGCCACC
  CGTCCCAAAC CCCAGAAACA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss357418895	MGP_WTSI_3_30407678	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs253041947					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357418895	MGP_WTSI_3_30407678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30562905 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13035	CpG island 13035			within coordinates
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574781	regulatory region 574781			350 bp distal
Rr574782	regulatory region 574782			40 bp proximal
Rr574783	regulatory region 574783			615 bp proximal
Rr574784	regulatory region 574784			663 bp proximal
Rr574785	regulatory region 574785			967 bp proximal
Tssr32895	transcription start site region 32895			706 bp downstream
Tssr32896	transcription start site region 32896			925 bp downstream
Tssr32897	transcription start site region 32897			996 bp downstream