rs253027319 SNP Detail

Summary

• ID
  rs253027319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGACCT ACAGTCTCCA
  GCCCCAAGCA CACCCAGTGG TCCCTACCCC AACACCATCA ACCCTGCTTC TGAAGTTCTA
  TGCACTTCGG CTCTTTCTGC CTGGTTCAAG ATTACTTTCT GTGTTTTGTG TTTCTCCTTT
  CTCCCCATTG CAGTTCAGTC TCTTGGGCAG TCATGAAGAA CAGGAAAGAG AAAAGGGGGG
  K
  TTTTGAAGAC AGATGGAACG CAGCTAGCAG TTTAAGTGAA GTAATTCGTG CATTTAAGCA
  TTTATTTATG TTTTGAGCCT TATTTTGATT TGAAAAGAAT TTAGGGTGGT TTGGAGAATT
  TAAGTGTTCC AGGAAAGGCG GCGAGTGATG CAACTTTCAA GCTTCATACA GTTTAGAAAA
  AAACAAAAAA ACAAAAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320125805	CHEV_1_174444762	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253027319					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342198 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	617 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1394 bp downstream
Rr396591	regulatory region 396591	297 bp downstream
Rr423601	regulatory region 423601	1429 bp distal
Rr423602	regulatory region 423602	1596 bp distal
Rr423603	regulatory region 423603	628 bp distal
Rr423604	regulatory region 423604	493 bp distal
Rr423605	regulatory region 423605	within coordinates
Rr423606	regulatory region 423606	277 bp proximal
Tssr302	transcription start site region 302	619 bp upstream
Tssr10235	transcription start site region 10235	1374 bp downstream
Tssr10236	transcription start site region 10236	484 bp downstream
Tssr15228	transcription start site region 15228	651 bp upstream