rs253023299 SNP Detail

Summary

• ID
  rs253023299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155378750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCATAGTC ACCACCCCTA CAGCATATAG
  GCCTCCTCCT GTCAGGAGGT AGACACAGAA TCACAACCCC AATGGAATGA CAAGGTCAGC
  CAAGGTCAGT TTAGCCAGAG GCCCCGAGAC TCACCATATG CCTCCTGCAG GTCAGCGGGA
  Y
  GAGGACGTGG CAGCGTTTAT GGACCAGCAG CTTGCAGTTG ATGCACCTGT AGCCCTGCCT
  CGAGAGACCC CATATCCTTT CGCTGCACTG GCCGCAGTAC GCTCCCTGTG GACGGAACAG
  CAGCTCTCAG GCCCACTTAG CCCTTCCCGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441554	CHEV_4_154668402	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253023299					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155378750 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			1384 bp proximal
Rr606444	regulatory region 606444			1959 bp proximal