rs253020196 SNP Detail

Summary

• ID
  rs253020196
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101350869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCTTT TCTTCTTCTT
  TCTCTCTCTC CCCCCCTCTT TTCTCTAAGT TTGTCTTATT GTATTTTCAG TGCCCAGTTT
  TGAGCTATGA AAAGAGATTC TTGTCCCTAA GCCTCTGAAT GTGCCTCAGG GCATTTGAAT
  TGTTTTCCAG CTCAGGCTGA GCCCTCTTCT CATGGGCTTC CAGGGTTTGT TGAAGAATAT
  T
  GCCCCCCCCC CACCCCTACC CCTACCCCCA CCCCCATCTA TCTGTGGCTC ACTGTAACTG
  TGGGAACCAG AAGCCTCTGA CCTTGTTCCA GCTCTGAGCT GGAAGAGTGT CATGAAGTCA
  CATGATGTTT GGAAGAAAAG GGGGAGAAAA GTCCCTCTGA TCTTTTCCAG ACCAATAAAT
  CTCTGTCTGC TGTCTGCTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss362615889	MGP_WTSI_4_101166277	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs253020196					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362615889	MGP_WTSI_4_101166277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101350869 () rs orientation: forward

Symbol	Name	Function Class
D4Mit176	DNA segment, Chr 4, Massachusetts Institute of Technology 176	1532 bp distal
D4Mit176.3	DNA segment, Chr 4, Massachusetts Institute of Technology 176.3	1363 bp distal
Rr596165	regulatory region 596165	95 bp proximal