rs253017906 SNP Detail

Summary

• ID
  rs253017906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152632432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAGGCG GTTGTGAGGA
  TGGGACGGAG ATTTCTGTCT TTCTATTAGG GATTTTTCCA TTCCTCAAAA CCCAGCCTCC
  TTTTAAGTCC AGGAGCCCCA CGGGCCACAT CCAGCGGGTG CCGAAGCCCG GGCTTGCGGG
  GCGGGGCGGC AGTGGCACAG GAGTAGACGC ACAGCTCATT AAGTCTGGTT GGAGGCTTCC
  R
  CCTGCTTGTT TACAAATGTA AATCCAAGGC GGCCTGGAAA ACAGACAATA TGGAAACAGC
  AAAACTCAAT TAGGTTCCGG AGAAATAAAC GAGGCTCCCA TGAGGAGGGG GACGCTGCTC
  CTGCTCCAGA GCCCTCGAGA CTCCGGGAGC CGCGGGCAGG ACGCGCCCAG CTCCCGCCCT
  ATGGGGCCTT TTTATATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321435168	CHEV_4_151922084	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253017906					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152632432 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605903	regulatory region 605903			1189 bp distal
Rr605904	regulatory region 605904			1274 bp distal
Rr605905	regulatory region 605905			within coordinates