rs253014827 SNP Detail

Summary

• ID
  rs253014827
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129023258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCAGGC CATGGAAGGA
  CAAAGCAGGC CACTGTCTCA GAATGACAGA AGCTGTCCTT GGCCAAGGAG TAGAGAGTTA
  ACAGTGGGTT CATAGAGCTC AGGAATGCCT ACAATAGCAT GTTTAGATTT ACTAATCTAA
  GAAATTAAGA AAACAAGCCT GGACTTTAGA GACGGGGCGG GGGGGGGGGG GGGGGCGGGG
  G
  GATACAAAGT GGCTCTTAGG CCTAGAGAGG CAGGAGGTGA TTGGACATTC AACGGGAATA
  GTGGCAGGTG ATAAGCAGTT GCCCCTCCTC CTGCCTAGCA TAGCCTCACC TTGAGCAAGA
  GGTGAGAGGA ATGCAGGGCT GGGGAAGATT ATTCCAGTCT TCCATCCCAA TATAGCAACA
  TTCCAGCTAT AAAACCTTTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355633807	MGP_WTSI_2_129007074	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253014827					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355633807	MGP_WTSI_2_129007074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129023258 () rs orientation: forward

Symbol	Name	Function Class
AI847159	expressed sequence AI847159	665 bp upstream
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	1265 bp upstream
Rr367309	regulatory region 367309	1044 bp downstream
Rr373843	regulatory region 373843	1794 bp downstream
Rr564859	regulatory region 564859	596 bp distal
Rr564860	regulatory region 564860	366 bp proximal
Rr564861	regulatory region 564861	624 bp proximal
Rr564862	regulatory region 564862	1345 bp proximal
Tssr26188	transcription start site region 26188	679 bp upstream
Tssr26189	transcription start site region 26189	667 bp upstream