rs252982230 SNP Detail

Summary

• ID
  rs252982230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98284442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCCGGCTG GCCGGCCTGC GAGCGCAGCG
  ATCGCGCGTG CTCGCGGATC TAGCGGCCCG CGGCCTCCCG CAGCGGGGCG GAGCCTCCCC
  GCGGTCGGTG GGAGGGAGGG GAGGGAGCAG AGGAACCGAC CTGGCCTCGA GTGGGCCTCG
  Y
  GTCCCTCCGG CCTCTCTCTG CTGAGCTGGG GAGGTGGCTC TTAAGTCTTT GGGAAAGTTA
  ATGGATTCCT GCTGGGAATC AAGTTCTGGA ACGCACATCT TTCCCACCTT TCGAATGCCC
  CACCCCTCCT TGGAATCTTC CCTGGACTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321220827	CHEV_4_98062896	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252982230					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98284442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patj	PATJ, crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr376896	regulatory region 376896			within coordinates
Rr595734	regulatory region 595734			303 bp distal
Rr595735	regulatory region 595735			within coordinates
Tssr37875	transcription start site region 37875			409 bp downstream
Tssr37876	transcription start site region 37876			317 bp downstream
Tssr37877	transcription start site region 37877			297 bp downstream
Tssr37878	transcription start site region 37878			173 bp upstream