rs252960807 SNP Detail

Summary

• ID
  rs252960807
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110250992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAGGCG GCAGTCAACC
  TCCCTGACCT TGACCTGCGA CAGGGATTGC AGTCGAGAGG TGAGTAGCTT TACTGCCCCA
  TGTCCACTCC AGGCCTCTCA CCACAGAGGC CGGATCCTGA GGTTAGACAT CCCCTCGTGC
  TGGGCTCTCT CCTGGGCTCT GGGAGACACT GAGTTGCTGT GTGTGTGCTG CATACACAGG
  K
  TCTTCATCTG AAAAACCAAG CCTTTCAAAA AGTGTGGCAT GTCCTTTGTC AGTATGGCTT
  AGATCTTCCC ACTGTTAGGG GAGTGGGGAA CTTGGAAGAG TTCTAGAGGA GACTCTGGGG
  CTTGGGAACA TCACATGACA GCCTATGGAA GCCTACCTCC CCCCAATTCA GATCTGCTCA
  AGCCCTCTGG CCGCCTGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902776	MGP_WTSI_9_110324428	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252960807					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902776	MGP_WTSI_9_110324428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110250992 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	Intron
Tssr3020	transcription start site region 3020	1035 bp downstream
Tssr3021	transcription start site region 3021	628 bp upstream
Tssr3022	transcription start site region 3022	181 bp upstream
Tssr3023	transcription start site region 3023	444 bp downstream
Tssr3024	transcription start site region 3024	467 bp downstream
Tssr3025	transcription start site region 3025	546 bp downstream
Tssr3026	transcription start site region 3026	602 bp downstream
Tssr3027	transcription start site region 3027	685 bp downstream
Tssr3028	transcription start site region 3028	763 bp downstream
Tssr3029	transcription start site region 3029	778 bp downstream
Tssr3030	transcription start site region 3030	799 bp downstream
Tssr3031	transcription start site region 3031	972 bp downstream
Tssr87362	transcription start site region 87362	1807 bp downstream
Tssr87363	transcription start site region 87363	1091 bp downstream
Tssr87364	transcription start site region 87364	1040 bp downstream
Tssr87365	transcription start site region 87365	1006 bp downstream
Tssr87366	transcription start site region 87366	217 bp downstream
Tssr87367	transcription start site region 87367	179 bp downstream
Tssr87368	transcription start site region 87368	342 bp upstream
Tssr87369	transcription start site region 87369	367 bp upstream
Tssr87370	transcription start site region 87370	400 bp upstream
Tssr87371	transcription start site region 87371	439 bp upstream
Tssr87372	transcription start site region 87372	495 bp upstream
Tssr87373	transcription start site region 87373	525 bp upstream
Tssr87374	transcription start site region 87374	566 bp upstream
Tssr87375	transcription start site region 87375	584 bp upstream
Tssr87376	transcription start site region 87376	606 bp upstream
Tssr87377	transcription start site region 87377	614 bp upstream
Tssr87378	transcription start site region 87378	664 bp upstream
Tssr87379	transcription start site region 87379	714 bp upstream
Tssr87380	transcription start site region 87380	927 bp upstream
Tssr91614	transcription start site region 91614	1961 bp upstream
Tssr91615	transcription start site region 91615	1927 bp upstream
Tssr91616	transcription start site region 91616	1050 bp upstream
Tssr91617	transcription start site region 91617	1025 bp upstream
Tssr91618	transcription start site region 91618	1005 bp upstream
Tssr91619	transcription start site region 91619	381 bp downstream
Tssr91620	transcription start site region 91620	485 bp downstream
Tssr91621	transcription start site region 91621	580 bp downstream
Tssr91622	transcription start site region 91622	622 bp downstream
Tssr91623	transcription start site region 91623	1084 bp downstream