rs252920238 SNP Detail

Summary

• ID
  rs252920238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29211419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGAGATGA CAGGTGACAG GCCACAGATG
  CTATTGACTC TCTAGCAGCT ACTCTGCCCT AATCAAGGGT TCTGATGCTC CTTCCTGGCA
  GGGATGTCGT CCTGCAGCCA GGAGACACAG CTAGTGCCAG GCCTGCAGGG AGAACTGGCT
  R
  AGGGCCCACA GGAAAATGCA AACTAAGCTT GAGGCAGACA GGTAACTCTC TACCTTTCTC
  CAAAAGGCCA CGTGGAGTGG GCTTAAAGGG TTGGCACAGA ATATTCATGG AGGGCATCAG
  TCCCAACCTA TGGGCAGGAA GCCGCACAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321775084	CHEV_6_29161420	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252920238					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29211419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17225	CpG island 17225	130 bp proximal
D6Mit180	DNA segment, Chr 6, Massachusetts Institute of Technology 180	1378 bp proximal
Impdh1	inosine monophosphate dehydrogenase 1	Intron
Rr627515	regulatory region 627515	within coordinates
Rr627516	regulatory region 627516	595 bp proximal
Rr627517	regulatory region 627517	819 bp proximal
Tssr55214	transcription start site region 55214	985 bp upstream
Tssr60074	transcription start site region 60074	820 bp downstream
Tssr60075	transcription start site region 60075	876 bp downstream
Tssr60076	transcription start site region 60076	1035 bp downstream