rs252894613 SNP Detail

Summary

• ID
  rs252894613
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGGAAC ACCCTTGGCC
  ATGAAATATG TTCTCCTTAC GTGCCTCAGC CTTTCAAAGT TCTGTGCATT AGAGTCAGGA
  ATTCCATTCT TCCTGGAGCT AAGCGTGGGG CCAGCTGTGT AAGTAAAGTT TTGTTTTTCT
  TCTTAAACAA CTTTTTCCCT CTATTTAAAA ATGTGAAGAA AAAGGCAAAA AAAACAACAA
  M
  AAAAAAAAAA ACAACAAAAA AAAACCCACC AAAAAACCTA GATATTCTTT TCTTTCATTT
  TTGCTCTCTT TAGTGGAAAG AAAAGGAATA AAAAGTTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA
  CTCACCCTTT TCAAGCTATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	LP/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J
ss358593256	MGP_WTSI_3_79689231	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	LP/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J
rs252894613					SNP	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593256	MGP_WTSI_3_79689231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	748 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1777 bp downstream
Rr375226	regulatory region 375226	166 bp upstream
Rr578602	regulatory region 578602	1828 bp distal
Rr578604	regulatory region 578604	1751 bp distal
Rr578605	regulatory region 578605	50 bp distal
Rr578606	regulatory region 578606	525 bp proximal
Rr578607	regulatory region 578607	1045 bp proximal
Rr578608	regulatory region 578608	1494 bp proximal
Rr578609	regulatory region 578609	1543 bp proximal
Rr578610	regulatory region 578610	1583 bp proximal
Tssr29596	transcription start site region 29596	738 bp downstream
Tssr29597	transcription start site region 29597	717 bp downstream
Tssr29598	transcription start site region 29598	219 bp downstream
Tssr29599	transcription start site region 29599	190 bp downstream
Tssr29600	transcription start site region 29600	141 bp downstream
Tssr29601	transcription start site region 29601	112 bp downstream
Tssr29602	transcription start site region 29602	640 bp upstream
Tssr29603	transcription start site region 29603	731 bp upstream
Tssr29604	transcription start site region 29604	803 bp upstream
Tssr29605	transcription start site region 29605	872 bp upstream
Tssr29606	transcription start site region 29606	905 bp upstream
Tssr29607	transcription start site region 29607	1575 bp upstream
Tssr29608	transcription start site region 29608	1593 bp upstream
Tssr33752	transcription start site region 33752	854 bp downstream
Tssr33753	transcription start site region 33753	872 bp downstream
Tssr33754	transcription start site region 33754	1487 bp downstream