rs252862114 SNP Detail

Summary

• ID
  rs252862114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116645809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCTACT CAGAGGAGAC AGGATGGAAG
  CCAGGAAGCC AGCCTGGGAA GACCCTGGTT TCTTACAAGG TAAACAGAGA AGCTTGGCAG
  GGGAAGAGTA TGGCACAGCA TCCTGGGAGG ATCTCAGGAT GCAGTGAggg gaggagtcgg
  R
  ggaggagtcg agggaggagt tgggggagga gtGGAGGCTA AGGAGGACCA TTCAGGACCA
  TTCAGCAAAA TAGGCTCTTG CAATTACAGG TTGCAACCAC AGGCAATAGG TCTCATGGGG
  GAGGGGCGTA GGGCCCTTAG AAAACAGCGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321918464	CHEV_6_116618866	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252862114					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116645809 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	within coordinates
Rr637229	regulatory region 637229	314 bp proximal
Rr637230	regulatory region 637230	1136 bp proximal
Rr637231	regulatory region 637231	1412 bp proximal
Tssr58383	transcription start site region 58383	537 bp upstream
Tssr58384	transcription start site region 58384	575 bp upstream
Tssr62604	transcription start site region 62604	457 bp upstream
Tssr62605	transcription start site region 62605	433 bp upstream