rs252856270 SNP Detail

Summary

• ID
  rs252856270
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127741344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGGAAA AAAATTAATA
  GAAAATATTT CCCATTAAGA GCTTGCAGCC AACGTGTAGG GAACAAACAA GAACTCACCA
  TGGGCACAGA CTTAAGTAGC TCTGAACAGA GATGAAGTTC AAAGGCATCC CTTGACCAAG
  AGAGGCTACC ACTCTTGACT CTAAACGTGA TCTCTGAGCT TGACTTCCAG CTGCCAGACA
  W
  CCAGAGTTGT TTTATCCTGC ATTGGGGTTC TTAGAATGAT CTAAAGTATT TCTCCTTACT
  TTTTCAGGAA CCCCCAAGAA TCTCGAGCCT TCTCGATCTT GGGATTAACT TAAAATTGCT
  GTTTTTGAAC CCTTAAAATC CTAGACTCCC AAGCATTGCA GTCACATAAT TCATACTTTC
  TTTCTTTCTT TCTTTCTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958538	CHEV_3_127650613	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252856270					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127741344 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	1326 bp upstream
Rr584909	regulatory region 584909	739 bp proximal
Rr584910	regulatory region 584910	1178 bp proximal
Rr584911	regulatory region 584911	1405 bp proximal