rs252853616 SNP Detail

Summary

• ID
  rs252853616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145124308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGTATT TTGTTGACTA
  AATAAAAGAG TATCTATTTT ATGGCATTTT AATAAAATAT TGATAAATGT AGGATTTTCA
  TCAAATTGTT TTTCTTTGGT TGTTAGGCAA TGTGTACAGA GAGTGTTTCG TCAGTGCCTT
  GAAACCTCAA AGCATCAAAT GCTCATGTGC TTGAATGCTT GGTCCTCAAC TGCTTAGCAG
  Y
  GTCTTGAAGG CCATGTAGCC TTTAGAAAGT ATTCTTTACT AAAGGAAGTG GTTCACTCAG
  GGAAAGTCTT GTGGGTTATA GCCAGCTGCA GTGCTACCAT ACTCCCCTTC TCCTCCTCCT
  CCTCCTCCTC CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC CCACTCCCCC TCCTATTCTA
  CCTATAGGTT CACCAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321008299	CHEV_3_145081517	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252853616					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145124308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			509 bp upstream
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			773 bp upstream
Rr586779	regulatory region 586779			520 bp distal
Rr586780	regulatory region 586780			321 bp distal