rs252829171 SNP Detail

Summary

• ID
  rs252829171
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95432139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTGCTG CTGCTGCTCC
  TGCTGCTCCT GCTGCTCCTG CTGCTGCTGC TGCTCCTGTC CCTGCTGCTG CTGCTGCTCC
  TGCTGCTCCT GCTGCTCCTG CTGCTGCTCC TGCTGCTCCT GCTGCTGCTC CTGCTGCTGC
  TCCTGCTGCT GCTGCTGCTG CTGCTGCTCC TGCTGCTCCT GCTGGTGCAC AACTCCACTG
  M
  AGTTCTCAGC GAGAGGGATT TCATGGGCCT AGTTCCTCAC AGGCTGATTC CAAGAATGAA
  GTCTTGTTTA CAGGTGTGCC TGATGGGCAA AGTCTAAGTT GTATAAGTCT GGGCGTTAGA
  CATACTCAAC CTGGAGGAGT GAACTTTGTA ATGTGAGAAA TTCTCCAGAT GGAGACATGA
  AGATCAGCAA TTCATGACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358902799	MGP_WTSI_3_95328750	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252829171					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358902799	MGP_WTSI_3_95328750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95432139 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	1958 bp upstream
Gm40096	predicted gene, 40096	329 bp upstream
Gm56808	predicted gene, 56808	within coordinates
Rr397840	regulatory region 397840	1774 bp upstream
Rr580964	regulatory region 580964	723 bp distal
Rr580965	regulatory region 580965	within coordinates
Rr580966	regulatory region 580966	47 bp proximal
Rr580967	regulatory region 580967	1677 bp proximal
Rr580968	regulatory region 580968	1969 bp proximal
Tssr30563	transcription start site region 30563	1949 bp upstream
Tssr30564	transcription start site region 30564	1972 bp upstream
Tssr30565	transcription start site region 30565	1991 bp upstream
Tssr34486	transcription start site region 34486	within coordinates
Tssr34487	transcription start site region 34487	51 bp downstream