rs252825263 SNP Detail

Summary

• ID
  rs252825263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69768676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCATTT GACTCTGTGG
  TTGGGCGCTA AGGGCGCACA GGGTCTGGAG GCTCCTCATC CTGCATATTC AACCGAGATT
  TTTTTTTTTT TCTGTCCAAG ATCTAGGGGC GTCCGGGGAC GGAAGCCTCT CGATTAATGA
  ACATTTGGGC AGCATCTGCC ATTCAGCTTC CACTCCAGGA GGGGGAGGCA TCGTAGGCTC
  Y
  ACTGGGCCGA TTGTGCTGAA GCGCGAATTT GAGCTACTGG CAGCTTTCTG CTCTTTCTCA
  CAACACACTT TCAGCAGGAT GGGAGCGCCA GCATTACGCA GAGGGAGCCT TATGCTATTG
  GACCGTGGTG TCTCCATGCA GGAAGCAGGG TGTCCCCCAA AGCTGAAGGT GGTTGGGGGG
  CTGGGAATGA GCCAGTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358334256	MGP_WTSI_3_69665265	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252825263					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358334256	MGP_WTSI_3_69665265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69768676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	within coordinates
Rr578229	regulatory region 578229	1432 bp distal
Rr578230	regulatory region 578230	913 bp distal
Rr578231	regulatory region 578231	1059 bp distal
Rr578232	regulatory region 578232	1010 bp distal
Rr578233	regulatory region 578233	9 bp distal
Rr578234	regulatory region 578234	88 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	mRNA-UTR
Tssr903	transcription start site region 903	1479 bp upstream
Tssr33558	transcription start site region 33558	1442 bp upstream
Tssr33559	transcription start site region 33559	31 bp downstream