rs252794394 SNP Detail

Summary

• ID
  rs252794394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:42951797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTGCCT GGAAGCCGCT
  GGAGTTCCCT GGGCACCCTG TTGCTGCTGT TCTAGGTTTC TTCCTGTCCT GGGGGAGAGA
  AAGTGTGGGC TGAGGCAAAG ATGGCAGACC ACCCATCTCC CTCTCAGACT GCTTTTAATG
  CCGTTTCCGA AAATGGCTGC CCTCCTCCAG ATGATCTTTC TTCTCTGCCT CCCCCAACTC
  Y
  AGGCTCCCCC ACAGGCGTGA CATGCTGGTG TGGGGAGATG GGGGAGTACC CGCCTTTATA
  GTGCCTTCTC TTTGTCAGAG TGAGGTGGCT TTCAGTACCA TGAGTCAACC TAGCCACCTG
  CAGCAGGCAG GAGCTAAGGT CACTCTCCCT GCCTATCTGG GGCCCCCTTA ACTGTCACAG
  CCCTCACTCC TGCCAGGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361308126	MGP_WTSI_4_42964669	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252794394					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361308126	MGP_WTSI_4_42964669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:42951797 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14174	CpG island 14174			1129 bp distal
Dnajb5	DnaJ heat shock protein family (Hsp40) member B5			Intron
				Noncoding-Transcript-Variant
Rr398224	regulatory region 398224			1877 bp downstream
Rr590884	regulatory region 590884			1920 bp distal
Rr590885	regulatory region 590885			1391 bp distal
Rr590886	regulatory region 590886			194 bp distal
Rr590887	regulatory region 590887			807 bp proximal
Tssr1154	transcription start site region 1154			1028 bp upstream
Tssr36908	transcription start site region 36908			1874 bp downstream
Tssr36909	transcription start site region 36909			1352 bp downstream
Tssr36910	transcription start site region 36910			1322 bp downstream
Tssr36911	transcription start site region 36911			1305 bp downstream
Tssr36912	transcription start site region 36912			975 bp upstream
Tssr36913	transcription start site region 36913			997 bp upstream
Tssr36914	transcription start site region 36914			1011 bp upstream