rs252767690 SNP Detail

Summary

• ID
  rs252767690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135154485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAAGCC GTTGGCTACT
  TAGTCCTCAG CTTGGTGTCC TGATTCTGTC TCCCCAGGTG GCAGTAGCAG TACCACATTG
  CCTTTCACAC AATCGCTCCT AAGCCACGAA GCACCAAAGT CAGGGGGAAA CGAGAACTGG
  ATCTGCACGG CACGACATGG GAAGCACGGA AATATACCAT GTCTCCAAGA AATTATGAGC
  Y
  ACCTCTTGGT GGCTCTGCCC TCTACAGCTG ACAACTACGG ATCCACAGAT GACCATATTT
  GGGGATTGGA ACCTTTCCCC TAGATCTACA ATTAGATATT TAACTTTGTG CTAAACATAG
  GTTTATTCGG GTAGCCCAAG GTCTGACAAT TTTTAGCTGA TTATATTAAT TATATTGCTG
  TGCCTGAACC TTTGGGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363365886	MGP_WTSI_4_134983089	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	C	C	T	T	C	C	C	T	T	T	C	T	T	C	C	T	C	C	T	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs252767690					SNP	C	T	C	C	C	C	C	T	T	C	C	C	T	T	T	C	T	T	C	C	T	C	C	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363365886	MGP_WTSI_4_134983089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135154485 () rs orientation: forward

Symbol	Name	Function Class
Gm69999	predicted gene, 69999	within coordinates
Rcan3	regulator of calcineurin 3	Intron
Rr367746	regulatory region 367746	328 bp downstream
Rr602028	regulatory region 602028	1201 bp distal
Rr602029	regulatory region 602029	within coordinates
Tssr43990	transcription start site region 43990	1538 bp downstream