rs252684659 SNP Detail

Summary

• ID
  rs252684659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115747992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAACAAAG AATGGAAAAT
  AGTTCCAGGA GGATGAGTTT CTGACTTTCC CACAGGTCAA AGTCAGTCAC CTGCTATTGG
  ATACAGTTTG ATCCCCAGAG TCTCCAGCTG TAGGTTTAGC CCTGTGACCT CGATCTTAAC
  TAGGCCTCTG TTGCTGTGTT AAAACACCAT GACCTAGGCA ACTAATAGAA GTGAGGGTTT
  R
  TTTGGCTTTA CGGTCCCAGA GGGACAAGAG TCCATCCTGG CTGGAAAGTG ACAGCAGGTC
  TGGCAAGAAG AGCAGGAAGT TCAGCTGTCA CATCTTTCAG AGAAACTGTG CTCTGTCAAA
  GTCCACCCCT CCCGACATAC TGTCTCCATC AAGACTGCAC CTCCTAAGCT TCCCCAAGCG
  GGTTACTAAC TGAGGACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916718	CHEV_6_115721049	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252684659					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115747992 () rs orientation: forward

Symbol	Name	Function Class
Gm44180	predicted gene, 44180	704 bp upstream
Rr637050	regulatory region 637050	787 bp distal
Rr637051	regulatory region 637051	328 bp distal
Rr637052	regulatory region 637052	within coordinates
Rr637053	regulatory region 637053	1140 bp proximal
Rr637054	regulatory region 637054	1360 bp proximal
Rr637055	regulatory region 637055	1554 bp proximal
Rr637056	regulatory region 637056	1794 bp proximal