rs252657828 SNP Detail

Summary

• ID
  rs252657828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:62739159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGGGCA GAAACCAGGC
  CAAACAACAA AACTTACAGC TTTAAAAAAG TCTTATCTTA CCATGCCGCT TGCTTAAGCA
  TGAAACCAAA TCTTAGTAAG ATACTTTAAG AGGCCAAATG TGGCTAAAAG TCCAAAATTG
  CCCAGGGTAC TAGTTTATAA GCAATAGTTT GCACCTGAGT CTCCAAACAG ATTAGATTAA
  M
  AAAAAAAAAA AAAAACCAGA CTGTGGTCCT CTGCCAAAGC CTGGCCTAGC AGCTGGTCTG
  AGACCATGTC AAGCTGTCTG TTTCTGGCTA TATAGACAGA CATTGCTGGA CCCAGCGGGG
  AACCTTCTTG GTCCTGGGTA TTGACAGGAA AGTGTTGAAA GTGTTTGACT GGCTGGTTCT
  GGACAGCAAA AGAAAGCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss383617097	MGP_WTSI_11_62661835	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs252657828					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383617097	MGP_WTSI_11_62661835	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62739159 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxw10	F-box and WD-40 domain protein 10			Intron
				Noncoding-Transcript-Variant
Rr386163	regulatory region 386163			1272 bp downstream
Rr448938	regulatory region 448938			1191 bp distal
Tssr102067	transcription start site region 102067			1246 bp downstream
Tssr102068	transcription start site region 102068			1230 bp downstream
Tssr102069	transcription start site region 102069			1201 bp downstream