rs252644544 SNP Detail

Summary

• ID
  rs252644544
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115153921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAACTTT ATATGCTCCA
  GTACCAGGGA AATGCCAGGG CCAAGAAGTG GGAGTGAGTA GGTAGGGGAG CAGGGCGGGG
  TGGGGGGAGG ATGGTATAGG AGACTTTTTG GGATAGCATT TGAAATGTAA ATGAAGAAAA
  TATCTAATAA TTTTTTTTTT TTTAAAAATC AGCCTGAGTG ACTTTGCTAA GAATTTTATG
  K
  ATTCTAAGTG GAATGGGAAG CTGTGCAAGA GTCTTGATAG AGTTTGTTAC CCTGGCCTAA
  CCTGCTGGAG TGGACTCAGG GAGGGAGAGA CTGGATGCTG ATGCTGGAAA GTGGCTATAA
  AGCTGCTGCA GATGCTCAGG TAGACTGAAC TGTCAGGCAA AAGTGGGGCC AGAGAGAAGT
  GGCACAGTAT AAGGAATACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915407	CHEV_6_115126978	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252644544					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115153921 () rs orientation: forward

Symbol	Name	Function Class
Rr636931	regulatory region 636931	1820 bp distal
Rr636932	regulatory region 636932	1957 bp proximal
Syn2	synapsin II	Intron